#!/usr/bin/env bash
set -euo pipefail
cd "$(dirname "$0")"

PY=~/joulebeat-evolve/outreach/env/bin/python
export OMP_NUM_THREADS=2

mkdir -p logs figs data

echo "== compiling C++ simulator and MSA aligner =="
g++ -O2 -std=c++17 -o src/simulate src/simulate.cpp
g++ -O2 -std=c++17 -o src/msa src/msa.cpp

echo "== running experiment =="
"$PY" experiment.py